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Protein Secondary Structure Prediction: An Application of Chou-Fasman Algorithm in a Hypothetical Protein of SARS Virus

DSVGK Kaladhar
Department of Bioinformatics, GIS, GITAM University, Visakhapatnam, Andhra Pradesh, 530045, India.
Abstract—Chou-Fasman algorithm is an empirical algorithm developed for the prediction of protein secondary structure. Implementation and interpretation of the secondary structure of protein has been done using C programming and the output of the result has been predicted good results compared with SOPMA, PSI Pred and Chou-Fasman v1.1 servers. The predicted protein confirmed good accuracy to PSSP results from C programming of the query protein compared to PDB.

Index Terms—Chou-Fasman algorithm, C programming, PSSP

Cite: DSVGK Kaladhar, "Protein Secondary Structure Prediction: An Application of Chou-Fasman Algorithm in a Hypothetical Protein of SARS Virus," International Journal of Life Sciences Biotechnology and Pharma Research, Vol. 1, No. 1, pp. 128-136, January 2012.
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